BioC 3.4: malbec1上的conumee检查报告

包: conumee

版本: 1.8.0

命令: /home/biocbuild/bb -3.4-bioc/R/bin/R CMD check——no-vignettes——timings conumee_ .8. tar.gz

StartedAt: 2017-04-14 21:46:56 -0400(2017年4月14日星期五)

EndedAt: 2017-04-14 22:17:47 -0400(2017年4月14日星期五)

EllapsedTime: 1850.9秒

RetCode: 0

状态：好吧

CheckDir: conumee。Rcheck

警告: 0

############################################################################## ############################################################################## ### ### 运行命令:# # # # # # /home/biocbuild/bbs - 3.4 - bioc R / R / bin / CMD检查——no-vignettes计时conumee_1.8.0.tar.gz  ### ############################################################################## ############################################################################## * 使用日志目录“/ home / biocbuild / bbs - 3.4 bioc /肉/ conumee。Rcheck ' *使用R版本3.3.3(2017-03-06)*使用平台:x86_64-pc-linux-gnu(64位)*使用会话字符集:UTF-8 *使用选项'——no-vignettes ' *检查文件' conumee/DESCRIPTION '…OK *这是' conumee '包版本' 1.8.0 ' *检查包命名空间信息…OK *检查包的依赖关系…OK *检查这是否是一个源包…OK *检查是否有命名空间…OK *检查隐藏文件和目录…发现以下隐藏文件和目录:. bbsoptions这些很可能是错误包含的。参见“编写R扩展”手册中的“包结构”部分。*检查可移植文件名… OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘conumee’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CNV.load,matrix: no visible binding for global variable ‘anno’ Undefined global functions or variables: anno * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed CNV.analysis-class 95.212 0.708 96.256 CNV.detailplot_wrap 82.100 0.260 82.420 CNV.write 79.280 0.340 79.670 CNV.detailplot 77.596 0.264 77.927 CNV.genomeplot 74.828 0.236 75.107 CNV.segment 67.064 0.124 67.231 CNV.bin 46.480 0.380 46.910 CNV.fit 41.680 0.004 41.716 CNV.detail 38.468 0.096 38.590 CNV.anno-class 34.752 0.056 34.840 CNV.create_anno 33.040 0.024 33.087 read.450k.url 8.720 0.208 19.761 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.4-bioc/meat/conumee.Rcheck/00check.log’ for details.

*正在安装源码包conumee…** R ** data ** inst **准备惰性加载包**帮助***安装帮助索引**构建包索引**安装vignettes **测试安装包是否可以加载* DONE (conumee)

的名字	用户	系统	运行
CNV.analysis-class	95.212	0.708	96.256
CNV.anno-class	34.752	0.056	34.840
CNV.bin	46.48	0.38	46.91
CNV.create_anno	33.040	0.024	33.087
CNV.data-class	1.380	0.008	1.390
CNV.detail	38.468	0.096	38.590
CNV.detailplot	77.596	0.264	77.927
CNV.detailplot_wrap	82.10	0.26	82.42
CNV.fit	41.680	0.004	41.716
CNV.genomeplot	74.828	0.236	75.107
CNV.load	1.956	0.008	1.967
CNV.segment	67.064	0.124	67.231
CNV.write	79.28	0.34	79.67
read.450k.url	8.720	0.208	19.761